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User Publications


Over 900 publications currently cite the Network software and DNA Alignment software. The following list is a random selection (users are invited to email us their recent publications):

Go to start of: 2007 | 2006 | 2005 | 2004 | 2003 | 2002 | 2001 | 2000

2007 | Go to page top

Edh K, Widén B, Ceplitis A.
Nuclear and chloroplast microsatellites reveal extreme population differentiation and limited gene flow in the Aegean endemic Brassica cretica (Brassicaceae).
Mol Ecol. 2007 Dec;16(23):4972-83.

Magri D, Fineschi S, Bellarosa R, Buonamici A, Sebastiani F, Schirone B, Simeone MC, Vendramin GG.
The distribution of Quercus suber chloroplast haplotypes matches the palaeogeographical history of the western Mediterranean.
Mol Ecol. 2007 Nov 11;

Tishkoff SA, Gonder MK, Henn BM, Mortensen H, Knight A, Gignoux C, Fernandopulle N, Lema G, Nyambo TB, Ramakrishnan U, Reed FA, Mountain JL.
History of click-speaking populations of Africa inferred from mtDNA and Y chromosome genetic variation.
Mol Biol Evol. 2007 Oct;24(10):2180-95.

Enattah NS, Trudeau A, Pimenoff V, Maiuri L, Auricchio S, Greco L, Rossi M, Lentze M, Seo JK, Rahgozar S, Khalil I, Alifrangis M, Natah S, Groop L, Shaat N, Kozlov A, Verschubskaya G, Comas D, Bulayeva K, Mehdi SQ, Terwilliger JD, Sahi T, Savilahti E, Perola M, Sajantila A, Jarvela I, Peltonen L.
Evidence of still-ongoing convergence evolution of the lactase persistence T-13910 alleles in humans.
Am J Hum Genet. 2007 Sep;81(3):615-25.

Santos-Lopes SS, Pereira RW, Wilson IJ, Pena SD.
A worldwide phylogeography for the human X chromosome.
PLoS ONE. 2007 Jun 27;2(6):e557.

Devi SM, Ahmed I, Francalacci P, Hussain MA, Akhter Y, Alvi A, Sechi LA, Megraud F, Ahmed N.
Ancestral European roots of Helicobacter pylori in India.
BMC Genomics. 2007 Jun 20;8:184.

Bai RK, Leal SM, Covarrubias D, Liu A, Wong LJ.
Mitochondrial genetic background modifies breast cancer risk.
Cancer Res. 2007 May 15;67(10):4687-94.

Kidd JM, Newman TL, Tuzun E, Kaul R, Eichler EE.
Population stratification of a common APOBEC gene deletion polymorphism.
PLoS Genet. 2007 Apr 20;3(4):e63.

Peters JL, Omland KE
Population structure and mitochondrial polyphyly in North American gadwalls (Anas strepera)
The Auk April 2007;124(2):444-462

Shoji A, Yokoyama J, Kawata M
Molecular Phylogeny and Genetic Divergence of the Introduced Populations of Japanese Guppies, Poecilia reticulata
Conservation Genetics 2007;8(2):261-271

Besnard G, Rubio de Casas R, Vargas P
Plastid and nuclear DNA polymorphism reveals historical processes of isolation and reticulation in the olive tree complex (Olea europaea)
Journal of Biogeography April 2007;34(4):736-752

Parkin EJ, Kraayenbrink T, Opgenort JR, van Driem GL, Tuladhar NM, de Knijff P, Jobling MA.
Diversity of 26-locus Y-STR haplotypes in a Nepalese population sample: isolation and drift in the Himalayas.
Forensic Sci Int. 2007 Mar 2;166(2-3):176-81. Epub 2006 Jun 15.

Jobling MA, Lo IC, Turner DJ, Bowden GR, Lee AC, Xue Y, Carvalho-Silva D, Hurles ME, Adams SM, Chang YM, Kraaijenbrink T, Henke J, Guanti G, McKeown B, van Oorschot RA, Mitchell RJ, de Knijff P, Tyler-Smith C, Parkin EJ.
Structural variation on the short arm of the human Y chromosome: recurrent multigene deletions encompassing Amelogenin Y.
Hum Mol Genet. 2007 Feb 1;16(3):307-16.

Roostalu U, Kutuev I, Loogvali EL, Metspalu E, Tambets K, Reidla M, Khusnutdinova EK, Usanga E, Kivisild T, Villems R.
Origin and expansion of haplogroup H, the dominant human mitochondrial DNA lineage in West Eurasia: the Near Eastern and Caucasian perspective.
Mol Biol Evol. 2007 Feb;24(2):436-48.

King TE, Parkin EJ, Swinfield G, Cruciani F, Scozzari R, Rosa A, Lim SK, Xue Y, Tyler-Smith C, Jobling MA.
Africans in Yorkshire? The deepest-rooting clade of the Y phylogeny within an English genealogy.
Eur J Hum Genet. 2007 Jan 24

Ingman M, Gyllensten U.
A recent genetic link between Sami and the Volga-Ural region of Russia.
Eur J Hum Genet. 2007 Jan;15(1):115-20.

Thalmann O, Fischer A, Lankester F, Paabo S, Vigilant L.
The Complex Evolutionary History of Gorillas: Insights From Genomic Data.
Mol Biol Evol. 2007;24:146-158

Lorenz-Lemke AP, Mader G, Muschner VC, Stehmann JR, Bonatto SL, Salzano FM, Freitas LB.
Diversity and natural hybridization in a highly endemic species of Petunia (Solanaceae): a molecular and ecological analysis.
Mol Ecol. 2006 Dec;15(14):4487-97.

2006 | Go to page top

Yu DH, Jia X, CHU KH.
Common pearl oysters in China, Japan, and Australia are conspecific: evidence from ITS sequences and AFLP.
Fisheries Science 2006 Dec;72(6):1183-1190

Hinttala R, Smeets R, Moilanen JS, Ugalde C, Uusimaa J, Smeitink JA, Majamaa K.
Analysis of mitochondrial DNA sequences in patients with isolated or combined oxidative phosphorylation system deficiency.
J Med Genet. 2006 Nov;43(11):881-6.

Grazziotin FG, Monzel M, Echeverrigaray S, Bonatto SL.
Phylogeography of the Bothrops jararaca complex (Serpentes: Viperidae): past fragmentation and island colonization in the Brazilian Atlantic Forest.
Mol Ecol. 2006 Nov;15(13):3969-82.

Kayser M, Brauer S, Cordaux R, Casto A, Lao O, Zhivotovsky LA, Moyse-Faurie C, Rutledge RB, Schiefenhoevel W, Gil D, Lin AA, Underhill PA, Oefner PJ, Trent RJ, Stoneking M.
Melanesian and Asian Origins of Polynesians: mtDNA and Y Chromosome Gradients Across the Pacific.
Mol Biol Evol. 2006 Nov;23(11):2234-44.

Fraumene C, Belle EM, Castri L, Sanna S, Mancosu G, Cosso M, Marras F, Barbujani G, Pirastu M, Angius A.
High Resolution Analysis and Phylogenetic Network Construction Using Complete mtDNA Sequences in Sardinian Genetic Isolates.
Mol Biol Evol. 2006 Nov;23(11):2101-11.

Meadows JRS, Hanotte O, Drögemüller C, Calvo J, Godfrey R, Coltman D, Maddox JF, Marzanov N, Kantanen J, Kijas JW
Globally dispersed Y chromosomal haplotypes in wild and domestic sheep
Anim Genet. 2006 Oct;37(5):444-53.

Sai K, Itoda M, Saito Y, Kurose K, Katori N, Kaniwa N, Komamura K, Kotake T, Morishita H, Tomoike H, Kamakura S, Kitakaze M, Tamura T, Yamamoto N, Kunitoh H, Yamada Y, Ohe Y, Shimada Y, Shirao K, Minami H, Ohtsu A, Yoshida T, Saijo N, Kamatani N, Ozawa S, Sawada J.
Genetic variations and haplotype structures of the ABCB1 gene in a Japanese population: an expanded haplotype block covering the distal promoter region, and associated ethnic differences.
Ann Hum Genet. 2006 Sep;70(Pt 5):605-22.

Guo S, Savolainen P, Su J, Zhang Q, Qi D, Zhou J, Zhong Y, Zhao X, Liu J.
Origin of mitochondrial DNA diversity of domestic yaks.
BMC Evol Biol. 2006 Sep 22;6:73.

Thanseem I, Thangaraj K, Chaubey G, Singh VK, Bhaskar LV, Reddy MB, Reddy AG, Singh L.
Genetic affinities among the lower castes and tribal groups of India: Inference from Y chromosome and mitochondrial DNA.
BMC Genet. 2006 Aug 7;7(1):42

Pires AE, Ouragh L, Kalboussi M, Matos J, Petrucci-Fonseca F, Bruford MW.
Mitochondrial DNA sequence variation in Portuguese native dog breeds: diversity and phylogenetic affinities.
J Hered. 2006 Jul-Aug;97(4):318-30.

Bosch E, Calafell F, Gonzalez-Neira A, Flaiz C, Mateu E, Scheil HG, Huckenbeck W, Efremovska L, Mikerezi I, Xirotiris N, Grasa C, Schmidt H, Comas D.
Paternal and maternal lineages in the Balkans show a homogeneous landscape over linguistic barriers, except for the isolated Aromuns.
Ann Hum Genet. 2006 Jul;70(Pt 4):459-87.

Ishikawa N, Yokoyama J, Ikeda H, Takabe E, Tsukaya H.
Evaluation of morphological and molecular variation in Plantago asiatica var. densiuscula, with special reference to the systematic treatment of Plantago asiatica var. yakusimensis.
J Plant Res. 2006 Jul;119(4):385-95.

Xue Y, Daly A, Yngvadottir B, Liu M, Coop G, Kim Y, Sabeti P, Chen Y, Stalker J, Huckle E, Burton J, Leonard S, Rogers J, Tyler-Smith C.
Spread of an inactive form of caspase-12 in humans is due to recent positive selection.
Am J Hum Genet. 2006 Apr;78(4):659-70.

Marmi J, Lopez-Giraldez F, Macdonald DW, Calafell F, Zholnerovskaya E, Domingo-Roura X.
Mitochondrial DNA reveals a strong phylogeographic structure in the badger across Eurasia.
Mol Ecol. 2006 Apr;15(4):1007-20.

Luis C, Bastos-Silveira C, Cothran EG, Oom Mdo M.
Iberian origins of New World horse breeds.
J Hered. 2006 Mar-Apr;97(2):107-13.

de Freitas JM, Augusto-Pinto L, Pimenta JR, Bastos-Rodrigues L, Gonçalves VF, Teixeira SMR, Chiari E, Junqueira ACV, Fernandes O, Macedo AM, Machado CR, Pena SDJ.
Ancestral Genomes, Sex, and the Population Structure of Trypanosoma cruzi
PLoS Pathog 2(3): e24 2006 Mar

Behar DM, Metspalu E, Kivisild T, Achilli A, Hadid Y, Tzur S, Pereira L, Amorim A, Quintana-Murci L, Majamaa K, Herrnstadt C, Howell N, Balanovsky O, Kutuev I, Pshenichnov A, Gurwitz D, Bonne-Tamir B, Torroni A, Villems R, Skorecki K.
The matrilineal ancestry of Ashkenazi Jewry: portrait of a recent founder event.
Am J Hum Genet. 2006 Mar;78(3):487-97.

Moore LT, McEvoy B, Cape E, Simms K, Bradley DG.
A y-chromosome signature of hegemony in gaelic ireland.
Am J Hum Genet. 2006 Feb;78(2):334-8.

Sengupta S, Zhivotovsky LA, King R, Mehdi SQ, Edmonds CA, Chow CE, Lin AA, Mitra M, Sil SK, Ramesh A, Usha Rani MV, Thakur CM, Cavalli-Sforza LL, Majumder PP, Underhill PA.
Polarity and temporality of high-resolution y-chromosome distributions in India identify both indigenous and exogenous expansions and reveal minor genetic influence of central asian pastoralists.
Am J Hum Genet. 2006 Feb;78(2):202-21.

Grobler PJ, Jones JW, Johnson NA, Beaty B, Struthers J, Neves RJ, Hallerman EM.
Patterns of genetic differentiation and conservation of the slabside pearlymussel, Lexingtonia Dolabelloides (Lea, 1840) in the Tennesse river drainage
Journal of Molluscan Studies 2006 Feb;72(1):65-75

Lai SJ, Liu YP, Liu YX, Li XW, Yao YG.
Genetic diversity and origin of Chinese cattle revealed by mtDNA D-loop sequence variation.
Mol Phylogenet Evol. 2006 Jan;38(1):146-54.

Lee HY, Yoo JE, Park MJ, Chung U, Shin KJ.
Mitochondrial DNA control region sequences in Koreans: identification of useful variable sites and phylogenetic analysis for mtDNA data quality control
Int J Legal Med. 2006 Jan;120(1):5-14.

Bowden R, Sakaoka H, Ward R, Donnelly P.
Patterns of Eurasian HSV-1 molecular diversity and inferences of human migrations.
Infect Genet Evol. 2006 Jan;6(1):63-74.

Wootton PT, Drenos F, Cooper JA, Thompson SR, Stephens JW, Hurt-Camejo E, Wiklund O, Humphries SE, Talmud PJ.
Tagging-SNP haplotype analysis of the secretory PLA2IIa gene PLA2G2A shows strong association with serum levels of sPLA2IIa: results from the UDACS study.
Hum Mol Genet. 2006 Jan 15;15(2):355-61.

Soejima M, Tachida H, Ishida T, Sano A, Koda Y.
Evidence for recent positive selection at the human AIM1 locus in a European population.
Mol Biol Evol. 2006 Jan;23(1):179-88.

2005 | Go to page top

Xue Y, Zerjal T, Bao W, Zhu S, Lim SK, Shu Q, Xu J, Du R, Fu S, Li P, Yang H, Tyler-Smith C.
Recent spread of a Y-chromosomal lineage in northern China and Mongolia.
Am J Hum Genet. 2005 Dec;77(6):1112-6.

Royo LJ, Alvarez I, Beja-Pereira A, Molina A, Fernandez I, Jordana J, Gomez E, Gutierrez JP, Goyache F.
The origins of Iberian horses assessed via mitochondrial DNA.
J Hered. 2005 Nov-Dec;96(6):663-9.

Tan Z, Shon AM, Ober C.
Evidence of balancing selection at the HLA-G promoter region.
Hum Mol Genet. 2005 Dec 1;14(23):3619-28.

Gotherstrom A, Anderung C, Hellborg L, Elburg R, Smith C, Bradley DG, Ellegren H.
Cattle domestication in the Near East was followed by hybridization with aurochs bulls in Europe.
Proc Biol Sci. 2005 Nov 22;272(1579):2345-50.

Eduardo Palma R, Marquet PA, Boric-Bargetto D
Inter- and intraspecific phylogeography of small mammals in the Atacama Desert and adjacent areas of northern Chile
Journal of Biogeography 2005 Nov;32(11):1931-42

Pedrosa S, Uzun M, Arranz JJ, Gutierrez-Gil B, San Primitivo F, Bayon Y.
Evidence of three maternal lineages in Near Eastern sheep supporting multiple domestication events.
Proc Biol Sci. 2005 Oct 22;272(1577):2211-7.

Shi H, Dong YL, Wen B, Xiao CJ, Underhill PA, Shen PD, Chakraborty R, Jin L, Su B.
Y-chromosome evidence of southern origin of the East Asian-specific haplogroup O3-M122.
Am J Hum Genet. 2005 Sep;77(3):408-19.

Sanchez JJ, Hallenberg C, Borsting C, Hernandez A, Morling N.
High frequencies of Y chromosome lineages characterized by E3b1, DYS19-11, DYS392-12 in Somali males.
Eur J Hum Genet. 2005 Jul;13(7):856-66 .

Han K, Sen SK, Wang J, Callinan PA, Lee J, Cordaux R, Liang P, Batzer MA.
Genomic rearrangements by LINE-1 insertion-mediated deletion in the human and chimpanzee lineages.
Nucleic Acids Res. 2005 Jul 20;33(13):4040-52.

van Asch B, Pereira L, Pereira F, Santa-Rita P, Lima M, Amorim A.
MtDNA diversity among four Portuguese autochthonous dog breeds: a fine-scale characterisation.
BMC Genet. 2005 Jun 22;6(1):37.

Natoli A, Birkun A, Aguilar A, Lopez A, Hoelzel AR.
Habitat structure and the dispersal of male and female bottlenose dolphins (Tursiops truncatus).
Proc Biol Sci. 2005 Jun 22;272(1569):1217-26.

Anderung C, Bouwman A, Persson P, Carretero JM, Ortega AI, Elburg R, Smith C, Arsuaga JL, Ellegren H, Gotherstrom A.
Prehistoric contacts over the Straits of Gibraltar indicated by genetic analysis of Iberian Bronze Age cattle.
Proc Natl Acad Sci U S A. 2005 Jun 14;102(24):8431-5.

Han K, Xing J, Wang H, Hedges DJ, Garber RK, Cordaux R, Batzer MA.
Under the genomic radar: the stealth model of Alu amplification.
Genome Res. 2005 May;15(5):655-64.

Lin L, Prassolov A, Funk A, Quinn L, Hohenberg H, Frolich K, Newbold J, Ludwig A, Will H, Sirma H, Steinbach F.
Evidence from nature: interspecies spread of heron hepatitis B viruses.
J Gen Virol. 2005 May;86(Pt 5):1335-42.

Voisin M, Engel CR, Viard F.
Differential shuffling of native genetic diversity across introduced regions in a brown alga: aquaculture vs. maritime traffic effects.
Proc Natl Acad Sci U S A. 2005 Apr 12;102(15):5432-7.

Neumann K, Michaux JR, Maak S, Jansman HA, Kayser A, Mundt G, Gattermann R.
Genetic spatial structure of European common hamsters (Cricetus cricetus)--a result of repeated range expansion and demographic bottlenecks.
Mol Ecol. 2005 Apr;14(5):1473-83.

Lorenz-Lemke AP, Muschner VC, Bonatto SL, Cervi AC, Salzano FM, Freitas LB.
Phylogeographic inferences concerning evolution of Brazilian Passiflora actinia and P. elegans (Passifloraceae) based on ITS (nrDNA) variation.
Ann Bot (Lond). 2005 Apr;95(5):799-806.

2004 | Go to page top

Achilli A, Rengo C, Magri C, Battaglia V, Olivieri A, Scozzari R, Cruciani F, Zeviani M, Briem E, Carelli V, Moral P, Dugoujon JM, Roostalu U, Loogvali EL, Kivisild T, Bandelt HJ, Richards M, Villems R, Santachiara-Benerecetti AS, Semino O, Torroni A.
The molecular dissection of mtDNA haplogroup H confirms that the Franco-Cantabrian glacial refuge was a major source for the European gene pool.
Am J Hum Genet. 2004 Nov;75(5):910-8.

Loogvali EL, Roostalu U, Malyarchuk BA, Derenko MV, Kivisild T, Metspalu E, Tambets K, Reidla M, Tolk HV, Parik J, Pennarun E, Laos S, Lunkina A, Golubenko M, Barac L, Pericic M, Balanovsky OP, Gusar V, Khusnutdinova EK, Stepanov V, Puzyrev V, Rudan P, Balanovska EV, Grechanina E, Richard C, Moisan JP, Chaventre A, Anagnou NP, Pappa KI, Michalodimitrakis EN, Claustres M, Golge M, Mikerezi I, Usanga E, Villems R.
Disuniting uniformity: a pied cladistic canvas of mtDNA haplogroup H in Eurasia.
Mol Biol Evol. 2004 Nov;21(11):2012-21.

Tanaka M, Cabrera VM, Gonzalez AM, Larruga JM, Takeyasu T, Fuku N, Guo LJ, Hirose R, Fujita Y, Kurata M, Shinoda K, Umetsu K, Yamada Y, Oshida Y, Sato Y, Hattori N, Mizuno Y, Arai Y, Hirose N, Ohta S, Ogawa O, Tanaka Y, Kawamori R, Shamoto-Nagai M, Maruyama W, Shimokata H, Suzuki R, Shimodaira H.
Mitochondrial genome variation in eastern Asia and the peopling of Japan.
Genome Res. 2004 Oct;14(10A):1832-50.

Howell N, Elson JL, Turnbull DM, Herrnstadt C.
African Haplogroup L mtDNA sequences show violations of clock-like evolution.
Mol Biol Evol. 2004 Oct;21(10):1843-54.

Metspalu M, Kivisild T, Metspalu E, Parik J, Hudjashov G, Kaldma K, Serk P, Karmin M, Behar DM, Gilbert MT, Endicott P, Mastana S, Papiha SS, Skorecki K, Torroni A, Villems R.
Most of the extant mtDNA boundaries in south and southwest Asia were likely shaped during the initial settlement of Eurasia by anatomically modern humans.
BMC Genet. 2004 Aug 31;5:26.

Arredi B, Poloni ES, Paracchini S, Zerjal T, Fathallah DM, Makrelouf M, Pascali VL, Novelletto A, Tyler-Smith C.
A predominantly neolithic origin for Y-chromosomal DNA variation in North Africa.
Am J Hum Genet. 2004 Aug;75(2):338-45.

Verkaar EL, Nijman IJ, Beeke M, Hanekamp E, Lenstra JA.
Maternal and paternal lineages in cross-breeding bovine species. Has wisent a hybrid origin?
Mol Biol Evol. 2004 Jul;21(7):1165-70.

Mas C, Taske N, Deutsch S, Guipponi M, Thomas P, Covanis A, Friis M, Kjeldsen MJ, Pizzolato GP, Villemure JG, Buresi C, Rees M, Malafosse A, Gardiner M, Antonarakis SE, Meda P.
Association of the connexin36 gene with juvenile myoclonic epilepsy.
J Med Genet. 2004 Jul;41(7):e93.

Rootsi S, Magri C, Kivisild T, Benuzzi G, Help H, Bermisheva M, Kutuev I, Barac L, Pericic M, Balanovsky O, Pshenichnov A, Dion D, Grobei M, Zhivotovsky LA, Battaglia V, Achilli A, Al-Zahery N, Parik J, King R, Cinnioglu C, Khusnutdinova E, Rudan P, Balanovska E, Scheffrahn W, Simonescu M, Brehm A, Goncalves R, Rosa A, Moisan JP, Chaventre A, Ferak V, Furedi S, Oefner PJ, Shen P, Beckman L, Mikerezi I, Terzic R, Primorac D, Cambon-Thomsen A, Krumina A, Torroni A, Underhill PA, Santachiara-Benerecetti AS, Villems R, Semino O.
Phylogeography of Y-chromosome haplogroup I reveals distinct domains of prehistoric gene flow in europe.
Am J Hum Genet. 2004 Jul;75(1):128-37.

Semino O, Magri C, Benuzzi G, Lin AA, Al-Zahery N, Battaglia V, Maccioni L, Triantaphyllidis C, Shen P, Oefner PJ, Zhivotovsky LA, King R, Torroni A, Cavalli-Sforza LL, Underhill PA, Santachiara-Benerecetti AS.
Origin, diffusion, and differentiation of Y-chromosome haplogroups E and J: inferences on the neolithization of Europe and later migratory events in the Mediterranean area.
Am J Hum Genet. 2004 May;74(5):1023-34.

Quintana-Murci L, Chaix R, Wells RS, Behar DM, Sayar H, Scozzari R, Rengo C, Al-Zahery N, Semino O, Santachiara-Benerecetti AS, Coppa A, Ayub Q, Mohyuddin A, Tyler-Smith C, Qasim Mehdi S, Torroni A, McElreavey K.
Where west meets east: the complex mtDNA landscape of the southwest and Central Asian corridor.
Am J Hum Genet. 2004 May;74(5):827-45.

Liebers D, de Knijff P, Helbig AJ.
The herring gull complex is not a ring species.
Proc Biol Sci. 2004 May 7;271(1542):893-901.

Tambets K, Rootsi S, Kivisild T, Help H, Serk P, Loogvali EL, Tolk HV, Reidla M, Metspalu E, Pliss L, Balanovsky O, Pshenichnov A, Balanovska E, Gubina M, Zhadanov S, Osipova L, Damba L, Voevoda M, Kutuev I, Bermisheva M, Khusnutdinova E, Gusar V, Grechanina E, Parik J, Pennarun E, Richard C, Chaventre A, Moisan JP, Barac L, Pericic M, Rudan P, Terzic R, Mikerezi I, Krumina A, Baumanis V, Koziel S, Rickards O, De Stefano GF, Anagnou N, Pappa KI, Michalodimitrakis E, Ferak V, Furedi S, Komel R, Beckman L, Villems R.
The western and eastern roots of the Saami--the story of genetic "outliers" told by mitochondrial DNA and Y chromosomes.
Am J Hum Genet. 2004 Apr;74(4):661-82.

Salas A, Richards M, Lareu MV, Scozzari R, Coppa A, Torroni A, Macaulay V, Carracedo A.
The African diaspora: mitochondrial DNA and the Atlantic slave trade.
Am J Hum Genet. 2004 Mar;74(3):454-65.

Duchene V, Ferdinand S, Filliol I, Guegan JF, Rastogi N, Sola C.
Phylogenetic reconstruction of Mycobacterium tuberculosis within four settings of the Caribbean region: tree
comparative analyse and first appraisal on their phylogeography.
Infect Genet Evol. 2004 Mar;4(1):5-14.

Joshi MB, Rout PK, Mandal AK, Tyler-Smith C, Singh L, Thangaraj K.
Phylogeography and origin of Indian domestic goats.
Mol Biol Evol. 2004 Mar;21(3):454-62.

Ricaut FX, Keyser-Tracqui C, Bourgeois J, Crubezy E, Ludes B.
Genetic analysis of a Scytho-Siberian skeleton and its implications for ancient Central Asian migrations.
Hum Biol. 2004 Feb;76(1):109-25.

Zhou G, Zhai Y, Dong X, Zhang X, He F, Zhou K, Zhu Y, Wei H, Yao Z, Zhong S, Shen Y, Qiang B, He F.
Haplotype Structure and Evidence for Positive Selection at the Human IL13 Locus
Mol. Biol. Evol. 21(1):29-36. 2004

Trovoada MJ, Pereira L, Gusmao L, Abade A, Amorim A, Prata MJ.
Pattern of mtDNA variation in three populations from Sao Tome e Principe.
Ann Hum Genet. 2004 Jan;68(Pt 1):40-54.

2003 | Go to page top

Reidla M, Kivisild T, Metspalu E, Kaldma K, Tambets K, Tolk HV, Parik J, Loogvali EL, Derenko M, Malyarchuk B, Bermisheva M, Zhadanov S, Pennarun E, Gubina M, Golubenko M, Damba L, Fedorova S, Gusar V, Grechanina E, Mikerezi I, Moisan JP, Chaventre A, Khusnutdinova E, Osipova L, Stepanov V, Voevoda M, Achilli A, Rengo C, Rickards O, De Stefano GF, Papiha S, Beckman L, Janicijevic B, Rudan P, Anagnou N, Michalodimitrakis E, Koziel S, Usanga E, Geberhiwot T, Herrnstadt C, Howell N, Torroni A, Villems R.
Origin and diffusion of mtDNA haplogroup X.
Am J Hum Genet. 2003 Nov;73(5):1178-90.

Basu A, Mukherjee N, Roy S, Sengupta S, Banerjee S, Chakraborty M, Dey B, Roy M, Roy B, Bhattacharyya NP, Roychoudhury S, Majumder PP.
Ethnic India: a genomic view, with special reference to peopling and structure.
Genome Res. 2003 Oct;13(10):2277-90.

Stead JD, Hurles ME, Jeffreys AJ.
Global haplotype diversity in the human insulin gene region.
Genome Res. 2003 Sep;13(9):2101-11.

Moilanen JS, Majamaa K.
Phylogenetic network and physicochemical properties of nonsynonymous mutations in the protein-coding genes of human mitochondrial DNA.
Mol Biol Evol. 2003 Aug;20(8):1195-210.

Herrnstadt C, Preston G, Howell N.
Errors, phantoms and otherwise, in human mtDNA sequences.
Am J Hum Genet. 2003 Jun;72(6):1585-6.

Knight A, Underhill PA, Mortensen HM, Zhivotovsky LA, Lin AA, Henn BM, Louis D, Ruhlen M, Mountain JL.
African Y chromosome and mtDNA divergence provides insight into the history of click languages.
Curr Biol. 2003 Mar 18;13(6):464-73. Erratum in: Curr Biol. 2003 Apr 15;13(8):705.

Kivisild T, Rootsi S, Metspalu M, Mastana S, Kaldma K, Parik J, Metspalu E, Adojaan M, Tolk HV, Stepanov V, Golge M, Usanga E, Papiha SS, Cinnioglu C, King R, Cavalli-Sforza L, Underhill PA, Villems R.
The genetic heritage of the earliest settlers persists both in Indian tribal and caste populations.
Am J Hum Genet. 2003 Feb;72(2):313-32.

Kayser M, Brauer S, Weiss G, Schiefenhovel W, Underhill P, Shen P, Oefner P, Tommaseo-Ponzetta M, Stoneking M.
Reduced Y-chromosome, but not mitochondrial DNA, diversity in human populations from West New Guinea.
Am J Hum Genet. 2003 Feb;72(2):281-302.

2002 | Go to page top

Salas A, Richards M, De la Fe T, Lareu MV, Sobrino B, Sanchez-Diz P, Macaulay V, Carracedo A.
The making of the African mtDNA landscape.
Am J Hum Genet. 2002 Nov;71(5):1082-111.

Liebers D, Helbig AJ
Phylogeography and colonization history of Lesser Black-backed Gulls (Larus fuscus) as revealed by mtDNA sequences.
Journal of Evolutionary Biology. 2002 Nov;15(6):1021-1033

Stadler T, Delph LF.
Ancient mitochondrial haplotypes and evidence for intragenic recombination in a gynodioecious plant.
Proc Natl Acad Sci U S A. 2002 Sep 3;99(18):11730-5.

Zerjal T, Wells RS, Yuldasheva N, Ruzibakiev R, Tyler-Smith C.
A genetic landscape reshaped by recent events: Y-chromosomal insights into central Asia.
Am J Hum Genet. 2002 Sep;71(3):466-82.

Toomajian C, Kreitman M.
Sequence variation and haplotype structure at the human HFE locus.
Genetics. 2002 Aug;161(4):1609-23.

Cruciani F, Santolamazza P, Shen P, Macaulay V, Moral P, Olckers A, Modiano D, Holmes S, Destro-Bisol G, Coia V, Wallace DC, Oefner PJ, Torroni A, Cavalli-Sforza LL, Scozzari R, Underhill PA.
A back migration from Asia to sub-Saharan Africa is supported by high-resolution analysis of human Y-chromosome haplotypes.
Am J Hum Genet. 2002 May;70(5):1197-214.

Herrnstadt C, Elson JL, Fahy E, Preston G, Turnbull DM, Anderson C, Ghosh SS, Olefsky JM, Beal MF, Davis RE, Howell N.
Reduced-median-network analysis of complete mitochondrial DNA coding-region sequences for the major African, Asian, and European haplogroups.
Am J Hum Genet. 2002 May;70(5):1152-71. Erratum in: Am J Hum Genet 2002 Aug;71(2):448-9.

Qamar R, Ayub Q, Mohyuddin A, Helgason A, Mazhar K, Mansoor A, Zerjal T, Tyler-Smith C, Mehdi SQ.
Y-chromosomal DNA variation in Pakistan.
Am J Hum Genet. 2002 May;70(5):1107-24.

Malhi RS, Eshleman JA, Greenberg JA, Weiss DA, Schultz Shook BA, Kaestle FA, Lorenz JG, Kemp BM, Johnson JR, Smith DG.
The structure of diversity within New World mitochondrial DNA haplogroups: implications for the prehistory of North America.
Am J Hum Genet. 2002 Apr;70(4):905-19. Epub 2002 Feb 13. Erratum in: Am J Hum Genet 2002 Jul;71(1):215.

Shimada MK, Terao K, Shotake T.
Mitochondrial sequence diversity within a subspecies of savanna monkeys (Cercopithecus aethiops) is similar to that between subspecies.
J Hered. 2002 Jan-Feb;93(1):9-18.

2001 | Go to page top

Gresham D, Morar B, Underhill PA, Passarino G, Lin AA, Wise C, Angelicheva D, Calafell F, Oefner PJ, Shen P, Tournev I, de Pablo R, Kucinskas V, Perez-Lezaun A, Marushiakova E, Popov V, Kalaydjieva L.
Origins and divergence of the Roma (gypsies).
Am J Hum Genet. 2001 Dec;69(6):1314-31.

Nebel A, Filon D, Brinkmann B, Majumder PP, Faerman M, Oppenheim A.
The Y chromosome pool of Jews as part of the genetic landscape of the Middle East.
Am J Hum Genet. 2001 Nov;69(5):1095-112.

Torroni A, Bandelt HJ, Macaulay V, Richards M, Cruciani F, Rengo C, Martinez-Cabrera V, Villems R, Kivisild T, Metspalu E, Parik J, Tolk HV, Tambets K, Forster P, Karger B, Francalacci P, Rudan P, Janicijevic B, Rickards O, Savontaus ML, Huoponen K, Laitinen V, Koivumaki S, Sykes B, Hickey E, Novelletto A, Moral P, Sellitto D, Coppa A, Al-Zaheri N, Santachiara-Benerecetti AS, Semino O, Scozzari R.
A signal, from human mtDNA, of postglacial recolonization in Europe.
Am J Hum Genet. 2001 Oct;69(4):844-52.

Hull J, Ackerman H, Isles K, Usen S, Pinder M, Thomson A, Kwiatkowski D.
Unusual haplotypic structure of IL8, a susceptibility locus for a common respiratory virus.
Am J Hum Genet. 2001 Aug;69(2):413-9.

Finnilä S, Lehtonen MS, Majamaa K.
Phylogenetic network for European mtDNA.
Am J Hum Genet. 2001 Jun;68(6):1475-84.

Bosch E, Calafell F, Comas D, Oefner PJ, Underhill PA, Bertranpetit J.
High-resolution analysis of human Y-chromosome variation shows a sharp discontinuity and limited gene flow between northwestern Africa and the Iberian Peninsula.
Am J Hum Genet. 2001 Apr;68(4):1019-29.

Adcock GJ, Dennis ES, Easteal S, Huttley GA, Jermiin LS, Peacock WJ, Thorne A.
Mitochondrial DNA sequences in ancient Australians: Implications for modern human origins.
Proc Natl Acad Sci U S A. 2001 Jan 16;98(2):537-42.

Maca-Meyer N, Gonzalez AM, Larruga JM, Flores C, Cabrera VM.
Major genomic mitochondrial lineages delineate early human expansions.
BMC Genet. 2001;2:13.

Kayser M, Brauer S, Weiss G, Schiefenhovel W, Underhill PA, Stoneking M.
Independent histories of human Y chromosomes from Melanesia and Australia.
Am J Hum Genet. 2001 Jan;68(1):173-190.

2000 | Go to page top

Fullerton SM, Clark AG, Weiss KM, Nickerson DA, Taylor SL, Stengard JH, Salomaa V, Vartiainen E, Perola M, Boerwinkle E, Sing CF.
Apolipoprotein E variation at the sequence haplotype level: implications for the origin and maintenance of a major human polymorphism.
Am J Hum Genet. 2000 Oct;67(4):881-900.

Helgason A, Sigureth ardottir S, Nicholson J, Sykes B, Hill EW, Bradley DG, Bosnes V, Gulcher JR, Ward R, Stefansson K.
Estimating Scandinavian and Gaelic ancestry in the male settlers of Iceland.
Am J Hum Genet. 2000 Sep;67(3):697-717.